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I might have been over retracting at 3 or 4 mm. After changing retraction to 2 mm, the noise disappeared and it looks like it's printing...
I added pics and upon further study it seems like it is exactly like a ketchup bottle, I am running out of filament which is why it makes that...
I meant to specify this in the original thread but I already thought of this but it is highly unlikely. I am using a fresh roll of AMZ 3D PLA...
I have a heavily modified Ender 3: Marlin 2.0.x bugfix Azteeg X5 Mini Wifi TMC2224 drivers Metal extruder upgrade Custom mount and Fang Fan PEI...